Accounting Tools · Payroll & PEO

Justworks Payroll

Strong Option · Justworks

Standalone payroll from Justworks, priced flat and sold without the co-employment contract

Best for
Firms with clients who want Justworks-grade software but do not need or want a PEO
Starting price
$8 / employee/month (plus a $50 monthly base fee; benefits enrollment is a $25 per enrolled employee add-on)
SOC 2
Yes
Multi-factor auth
Yes
Integrates with
QuickBooks Online, Xero

The read

What Justworks Payroll does

Justworks built its reputation on co-employment, and Payroll is the unbundled version of that: the software and the tax filing without the PEO contract, the master medical plan or the shared workers' compensation policy. Pricing is published at $8 per employee per month plus a $50 monthly base fee, which is unusually transparent for this category and cheap for a client with fifteen or twenty staff. The product covers multi-state payroll with automated filings, multiple pay rates, custom pay periods, off-cycle runs, W-2 and 1099 filing, employee onboarding and offboarding, and basic timecards and PTO tracking that several competitors charge extra for. Reporting includes cash flow forecasting. Health insurance, 401(k), domestic and international contractor payments and fuller time tracking are add-ons, and benefits enrollment carries a separate $25 per enrolled employee per month charge that changes the arithmetic quickly on a client that actually offers coverage.

For a firm, the relevant question is what the partner arrangement looks like, and here the answer is partly published and partly not. Justworks runs an accountant program with, by its own count, more than 700 partner firms. Partners get a single sign-in advisor dashboard across all their client accounts, a dedicated relationship manager, a partner relationship management tool for tracking referrals, and access to the expense management, time tracking and R&D tax credit pieces. Compensation is described as partner revenue share or client rebates that scale with the partnership. No percentages, no thresholds and no wholesale rate card are published. There is no stated option for the firm to buy at a wholesale price, bill the client itself and keep the spread, which is the arrangement Gusto Pro puts in writing.

The processing model is client-first rather than firm-first. Each client runs its own payroll in its own account and the firm watches through the advisor dashboard. There is no batch run across a book and no after-the-fact payroll entry for write-up work. That makes this a product a firm recommends and supports rather than one it operates at scale, and it caps how many clients one person can carry. The other limitation is focus: Justworks' centre of gravity remains the PEO, and Payroll is the newer, lighter sibling, so features and depth generally land in the PEO context first.

Against Gusto the comparison is close on software and clearly worse on partner economics, since Gusto publishes three billing models and Justworks publishes none. Against OnPay it is similar in price and simpler in scope. Against Justworks PEO itself, the split is straightforward: a client that needs group medical it could not otherwise buy belongs on the PEO, a client that already has a broker and just needs payroll run properly belongs here.

Strong option is the right tier and the inherited value stands. The security position supports it, with SOC 1 and SOC 2, IRS CPEO certification, ESAC accreditation and multi-factor authentication documented on the trust page. What holds it back from a top pick is not the software but the channel: a firm cannot see, before it signs a partner agreement, whether the economics are worth the referral.

Capabilities

What you get

Multi-state payroll with automated federal, state and local tax filing

Multiple pay rates, custom pay periods and off-cycle runs

W-2 and 1099 filing, digital pay stubs, employee onboarding and offboarding

Basic timecards and PTO tracking included rather than sold separately

Payroll reporting with cash flow forecasting

Advisor dashboard giving partner firms one sign-in across all client accounts

Pricing, security, integrations

What it costs and what it connects to

Justworks Payroll starts at $8 per employee/month (plus a $50 monthly base fee; benefits enrollment is a $25 per enrolled employee add-on). Pricing is per employee, per month plus a base fee.

Justworks Payroll holds a SOC 2 report, multi-factor authentication is available.

Justworks Payroll connects to QuickBooks Online and Xero. Supporting more than one ledger matters for firms whose clients are split across them.

Vendor pricing page · Vendor security page

Our rating

Why we rate Justworks Payroll a Strong Option

Justworks Payroll is rated Strong Option, alongside 8 other of the 19 payroll & peo tools in this directory.

A credible choice that wins on a specific fit rather than across the board — a price point, a niche, a workflow, or an integration the top picks do not cover as well.

How these ratings are decided.

Same vendor

More from Justworks

Justworks PEO

Certified PEO for small employers, bundling benefits pooling with co-employment risk

Top Pick

Alternatives

Justworks Payroll alternatives

Gusto

Small-business payroll with a partner program that lets firms choose how they bill

Top Pick

OnPay

Flat-rate full-service payroll with a partner program that lets the firm bill and keep a share

Top Pick

Justworks PEO

Certified PEO for small employers, bundling benefits pooling with co-employment risk

Top Pick

Rippling

Employee system of record with payroll, benefits, IT and spend built on the same record

Top Pick

Patriot Payroll

Low-cost US payroll sold to firms at a volume discount they bill on at their own rate

Strong Option

QuickBooks Payroll Premium

Middle payroll tier for QuickBooks Online clients, adding time tracking and same-day deposit

Strong Option

Sources

Where these facts came from

Researched from public sources. Pricing and security claims change without notice, so check the vendor before you buy. Last reviewed September 8, 2026.

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